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Day - 08 Hour (United States of America)

This is a Stanford Health Care job.

A Brief Overview
As a Bioinformatics Senior Staff Scientist you will be responsible for developing and maintaining Next Generation Sequencing data analysis workflows for use in a molecular genetic testing setting. This includes algorithms development as well as workflow/pipeline design. You will develop and implement bioinformatics tools for test development and validation, generate test validation results, and integrate data for review. You will work closely with the software engineering team to integrate analysis pipelines into production systems and automate tests and benchmarking analysis.

Locations
Stanford Health Care

What you will do

• Develop algorithms and tools for analysis, benchmarking, and quality assessment of sequencing data
• Develop and improve end-to-end genomics pipelines for clinical genetic testing
• Work closely with the genomic scientists and genetic counselors to identify possible improvements to our analysis pipelines that will improve the variants filtering and prioritization
• Stay up to date with the latest developments and best practices of NGS data analysis in genetic testing
• Maintain a high profile in the genomics and bioinformatics community through publications, conference presentations and collaborations
• Provide mentorship and guidance for junior members of the team

Education Qualifications

• Graduate Degree (Ph.D./M.S,) in a work-related field/discipline from an accredited college or university.

Experience Qualifications

• Ph.D. plus 3 years or M.S. plus 6 years of experience developing pipelines and algorithms for computational biology, genomics, and clinical diagnostics

Required Knowledge, Skills and Abilities

• Significant experience in algorithmic techniques common to bioinformatics (e.g., dynamic programming and graph algorithms), machine learning and statistical analysis methods (e.g., Bayesian inference, Hidden Markov Models, Principal Component Analysis)
• Experience with NGS data and best practices for germline sequencing
• Experience with developing vectorized code and multi-threading
• Expertise in bioinformatics resources and tools such as BLAST, BWA, GATK, dbGaP, NCBI, EBI, UCSC genome browser, etc.
• Experience using public annotation sources such as ClinGen, ClinVar, HGMD, cbGap, EVS, 1000 Genomes, gnomAD, and DGV
• Proficient in Python, competent in C++, Java, SQL, and R
• Experience in Unix/Linux and cloud computing
• Strong analytical abilities and communication skills
• Excellent problem-solving skills for moderately complex problems in bioinformatics

Licenses and Certifications

• None
  

These principles apply to ALL employees:

SHC Commitment to Providing an Exceptional Patient & Family Experience

Stanford Health Care sets a high standard for delivering value and an exceptional experience for our patients and families. Candidates for employment and existing employees must adopt and execute C-I-CARE standards for all of patients, families and towards each other. C-I-CARE is the foundation of Stanford’s patient-experience and represents a framework for patient-centered interactions. Simply put, we do what it takes to enable and empower patients and families to focus on health, healing and recovery.

You will do this by executing against our three experience pillars, from the patient and family’s perspective:

• Know Me: Anticipate my needs and status to deliver effective care
• Show Me the Way: Guide and prompt my actions to arrive at better outcomes and better health
• Coordinate for Me: Own the complexity of my care through coordination

Equal Opportunity Employer Stanford Health Care (SHC) strongly values diversity and is committed to equal opportunity and non-discrimination in all of its policies and practices, including the area of employment. Accordingly, SHC does not discriminate against any person on the basis of race, color, sex, sexual orientation or gender identity and/or expression, religion, age, national or ethnic origin, political beliefs, marital status, medical condition, genetic information, veteran status, or disability, or the perception of any of the above. People of all genders, members of all racial and ethnic groups, people with disabilities, and veterans are encouraged to apply. Qualified applicants with criminal convictions will be considered after an individualized assessment of the conviction and the job requirements.

Base Pay Scale: Generally starting at $60.86 - $80.65 per hour

The salary of the finalist selected for this role will be set based on a variety of factors, including but not limited to, internal equity, experience, education, specialty and training. This pay scale is not a promise of a particular wage.